]> has Sequence A predicate allowing any "thing" to assert a relationship to a Sequence object. object Properties Super property for all Sequences object properties. accession ID Generic accession id. Super property for all Sequences datatype properties. datatype Properties FASTA Header FASTA header line. Genbank accession number GenBank accession number. See http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html#AccessionB. Genbank ID (GI number) GenBank 'GI' [Gen Info] number. See http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html#GInB. name Al name(s) for the sequence. record URL A link to a URL (record) associated with or for the sequence. the sequence The actual sequence serialized as a string. BAI Marker class for BAI (Binary Sequence Alignment and Modeling Index) format. BAM Marker class for BAM (Binary Sequence Alignment and Modeling) format. FASTA 0 Marker class for FASTA format (ref: http://en.wikipedia.org/wiki/FASTA_format). FASTA(Q) Formats Superclass for FASTA (fastq) formats FASTQ 0 Marker class for FASTQ format (ref: http://en.wikipedia.org/wiki/Fastq). Formats Root format class. It is used to tag sequence objects as belonging to a specified format, as well as presenting a method for linking parsers and validators to the object. For example, a sequence object could belong to both classes seq:Sequence and seq:FASTA. Because this class is a subClass of data:DataFormats, could have the predicates data:hasParser, data:hasSerializer, and others, each pointing to a parser or serializer for the FASTA sequence. The actual sequence data would be either at the resource (URL) of the object, or embedded as a string literal of the predicate sequenceStr. Genbank ASN.1 Marker class for GenBank ASN.1 format. Ref: http://www.ncbi.nlm.nih.gov/Sitemap/Summary/asn1.html. Genbank flat file Marker class for GenBank Flat File format. Ref: http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html. Genbank Formats Superclass for GenBank formats. Ref: http://www.ncbi.nlm.nih.gov/IEB and links within. Genbank XML Marker class for GenBank XML format. Ref: http://www.ncbi.nlm.nih.gov/IEB and links within. SAI Marker class for SAI (Sequence Alignment and Modeling Index) format. SAM Marker class for SAM (Sequence Alignment and Modeling) format. SAM Formats Super class for SAM (Sequence Alignment and Modeling) formats. ref: Li H et al. (2009) The Sequence alignment map (SAM) format and SAMtools. Bioinformatics 25: 2078-9. [PMID: 19505943]. See also http://samtools.sourceforge.net. Sequence 1 1 0 0 Superclass for a sequence object. Sequences may have name(s) and accession number(s). A sequence may be the resource itself (whereby its format can be tagged by aggregation with the seq:Formats class), or it may be embedded as the string literal object for the predicate seq:theSequence. A sequence object can also point to the sequence or a record about the sequence using the seq:recordURL predicate. Sequences Root class for all concepts.