<?xml version="1.0"?>
<!DOCTYPE rdf:RDF [
  <!ENTITY rdfs 'http://www.w3.org/2000/01/rdf-schema#'>
  <!ENTITY ro 'http://purl.org/sswap/RO/'>
  <!ENTITY so 'http://purl.org/sswap/SO/'>
  <!ENTITY xsd 'http://www.w3.org/2001/XMLSchema#'>
  <!ENTITY owl 'http://www.w3.org/2002/07/owl#'>
  <!ENTITY rdf 'http://www.w3.org/1999/02/22-rdf-syntax-ns#'>
  <!ENTITY oboInOwl 'http://purl.org/sswap/oboInOwl/'>]>
<rdf:RDF
    xmlns:rdf="&rdf;"
    xmlns:ro="&ro;"
    xmlns:owl="&owl;"
    xmlns:xsd="&xsd;"
    xmlns:oboInOwl="&oboInOwl;"
    xmlns:so="&so;"
    xmlns:rdfs="&rdfs;">
    <owl:Ontology rdf:about="&so;owlOntology">
        <owl:imports rdf:resource="&so;owlOntology"/>
    </owl:Ontology>
    <owl:Class rdf:about="&so;SO_0000253">
        <oboInOwl:hasOBONamespace rdf:datatype="&xsd;string">sequence</oboInOwl:hasOBONamespace>
        <rdfs:subClassOf>
            <owl:Class rdf:about="&so;SO_0000655"/>
        </rdfs:subClassOf>
        <oboInOwl:inSubset rdf:resource="http://purl.org/sswap/SOFA/SOFA"/>
        <rdfs:subClassOf>
            <owl:Restriction>
                <owl:onProperty>
                    <owl:TransitiveProperty rdf:about="&ro;derives_from"/>
                </owl:onProperty>
                <owl:someValuesFrom>
                    <owl:Class rdf:about="&so;SO_0000210"/>
                </owl:someValuesFrom>
            </owl:Restriction>
        </rdfs:subClassOf>
        <oboInOwl:hasDefinition>
            <oboInOwl:Definition>
                <rdfs:label xml:lang="en">Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position.</rdfs:label>
                <oboInOwl:hasDbXref>
                    <oboInOwl:DbXref>
                        <rdfs:label rdf:datatype="&xsd;string"
                        >URL:http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005</rdfs:label>
                        <oboInOwl:hasURI rdf:datatype="&xsd;anyURI"
                        >http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005</oboInOwl:hasURI>
                    </oboInOwl:DbXref>
                </oboInOwl:hasDbXref>
                <oboInOwl:hasDbXref>
                    <oboInOwl:DbXref>
                        <rdfs:label rdf:datatype="&xsd;string"
                        >ISBN:0198506732</rdfs:label>
                        <oboInOwl:hasURI rdf:datatype="&xsd;anyURI"
                        >http://purl.org/obo/owl/ISBN#ISBN_0198506732</oboInOwl:hasURI>
                    </oboInOwl:DbXref>
                </oboInOwl:hasDbXref>
            </oboInOwl:Definition>
        </oboInOwl:hasDefinition>
        <rdfs:label xml:lang="en">tRNA</rdfs:label>
        <oboInOwl:hasRelatedSynonym>
            <oboInOwl:Synonym>
                <rdfs:label xml:lang="en">transfer ribonucleic acid</rdfs:label>
            </oboInOwl:Synonym>
        </oboInOwl:hasRelatedSynonym>
        <rdfs:comment rdf:datatype="&xsd;string">This term is mapped to MGED. Do not obsolete without consulting MGED ontology.</rdfs:comment>
        <oboInOwl:hasRelatedSynonym>
            <oboInOwl:Synonym>
                <rdfs:label xml:lang="en">transfer RNA</rdfs:label>
            </oboInOwl:Synonym>
        </oboInOwl:hasRelatedSynonym>
    </owl:Class>
</rdf:RDF>

